halophFGD

Basic Information

Locus ID: Sbi_jg43927

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000013l	13306821	13312426	+	Sbi_jg43927

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.80	41,927.45 Da	44.70	76.06	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01753	MYND finger	78	115	1.4E-9	IPR002893
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	170	310	4.5E-17	IPR001394
SUPERFAMILY	SSF54001	Cysteine proteinases	166	357	3.34E-45	IPR038765
SUPERFAMILY	SSF144232	HIT/MYND zinc finger-like	75	122	5.41E-12	-
Gene3D	G3DSA:6.10.140.2220	-	63	120	4.7E-14	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	164	364	4.3E-48	-
ProSiteProfiles	PS50865	Zinc finger MYND-type profile.	78	115	12.069341	IPR002893
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	170	373	23.408867	IPR028889
ProSitePatterns	PS01360	Zinc finger MYND-type signature.	78	115	-	IPR002893
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	171	186	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K11855 (ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G24640.1	ubiquitin-specific protease 19.
RefSeq	XP_021864530.1	ubiquitin carboxyl-terminal hydrolase 18-like [Spinacia oleracea]
Swiss-Prot	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2
TrEMBL	A0A0K9R6D3	Ubiquitin carboxyl-terminal hydrolase 18-like OS=Spinacia oleracea OX=3562 GN=SOVF_107080 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg10796, jg20051, jg34876, jg36847, jg39549, jg7792
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16884, gene_23368, gene_25291, gene_7649
Amaranthaceae	Atriplex hortensis	4	Ah007223, Ah023706, Ah026751, Ah031699
Amaranthaceae	Beta vulgaris	2	BVRB_1g007770, BVRB_6g139030
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg19028, Sbi_jg19353, Sbi_jg37456, Sbi_jg4175 ... Sbi_jg43927, Sbi_jg49627, Sbi_jg59797, Sbi_jg62772
Amaranthaceae	Salicornia europaea	5	Seu_jg18008, Seu_jg24069, Seu_jg5298, Seu_jg5299, Seu_jg5622
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001028, GOSA_00013540, GOSA_00015287, GOSA_00022356
Amaranthaceae	Suaeda glauca	9	Sgl10579, Sgl15830, Sgl22375, Sgl27627, Sgl34239, Sgl39584 ... Sgl39629, Sgl65340, Sgl65426
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000000191, gene:ENSEOMG00000002393 ... gene:ENSEOMG00000003126, gene:ENSEOMG00000010335, gene:ENSEOMG00000012869, gene:ENSEOMG00000013532, gene:ENSEOMG00000015217, gene:ENSEOMG00000023633, gene:ENSEOMG00000027549, gene:ENSEOMG00000028670, gene:ENSEOMG00000036581, gene:ENSEOMG00000043643, gene:ENSEOMG00000047874
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0010600, CQ.Regalona.r1.1BG0015250 ... CQ.Regalona.r1.2AG0000470, CQ.Regalona.r1.4AG0015690, CQ.Regalona.r1.4AG0023990, CQ.Regalona.r1.4BG0016860, CQ.Regalona.r1.6AG0019110, CQ.Regalona.r1.6BG0020220
Anacardiaceae	Pistacia vera	3	pistato.v30041790, pistato.v30163770, pistato.v30251660
Apiaceae	Apium graveolens	5	Ag2G00052, Ag2G00496, Ag3G00070, Ag3G02449, Ag9G02723
Arecaceae	Cocos nucifera	8	COCNU_02G002700, COCNU_03G007490, COCNU_03G013510 ... COCNU_05G005120, COCNU_11G009220, COCNU_13G003830, contig69138511G000010, scaffold048079G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103701557, gene-LOC103703029, gene-LOC103707112 ... gene-LOC103710991, gene-LOC103716161, gene-LOC120107561
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2564.V1.1, AsparagusV1_03.1900.V1.1 ... AsparagusV1_05.3448.V1.1, AsparagusV1_07.2648.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G11882, Ftri14G11677, Ftri18G19627, Ftri7G04438 ... Ftri7G18094, Ftri8G18815
Brassicaceae	Arabidopsis thaliana	5	AT1G17110.2, AT2G24640.1, AT4G24560.1, AT4G31670.1 ... AT5G65450.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10000088m.g.v1.0, Thhalv10003706m.g.v1.0 ... Thhalv10006749m.g.v1.0, Thhalv10024307m.g.v1.0, Thhalv10024675m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g15230.v2.2, Sp2g28530.v2.2, Sp4g03620.v2.2 ... Sp5g33540.v2.2, Sp7g22560.v2.2, Sp7g29480.v2.2
Brassicaceae	Brassica nigra	8	BniB01g018910.2N, BniB02g022680.2N, BniB02g081260.2N ... BniB03g006940.2N, BniB05g006290.2N, BniB05g012640.2N, BniB06g013730.2N, BniB06g042510.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0840, Ceq03G1215, Ceq03G1781, Ceq05G1735, Ceq05G1739 ... Ceq05G1746, Ceq05G1751, Ceq05G1757
Casuarinaceae	Casuarina glauca	10	Cgl01G0964, Cgl03G1319, Cgl03G1923, Cgl05G0062, Cgl05G1739 ... Cgl05G1740, Cgl05G1743, Cgl05G1745, Cgl05G1747, Cgl05G1749
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g07660, gene.Cymno11g00040, gene.Cymno11g07290
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g10860, gene.Thate04g13150, gene.Thate05g14930 ... gene.Thate05g26910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10643, nbisL1-mrna-4050, nbisL1-mrna-5222
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2711, evm.TU.LG06.1587, evm.TU.LG07.1579
Plantaginaceae	Plantago ovata	3	Pov_00021045, Pov_00030579, Pov_00037205
Plumbaginaceae	Limonium bicolor	5	Lb3G17603, Lb3G17604, Lb5G27661, Lb7G34669, Lb7G34737
Poaceae	Echinochloa crus-galli	12	AH03.2218, AH06.2505, AH07.1004, AH08.1839, BH03.2180 ... BH06.2307, BH07.1116, BH08.1919, CH03.2553, CH06.2531, CH07.893, CH08.2103
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0107590, gene-QOZ80_2BG0161210 ... gene-QOZ80_6AG0538070, gene-QOZ80_6AG0546910, gene-QOZ80_6BG0500380, gene-QOZ80_8AG0634560, gene-QOZ80_8BG0663500
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0487600.1, HORVU.MOREX.r3.6HG0583100.1 ... HORVU.MOREX.r3.7HG0693570.1, HORVU.MOREX.r3.7HG0740830.1
Poaceae	Lolium multiflorum	5	gene-QYE76_005775, gene-QYE76_022002, gene-QYE76_022268 ... gene-QYE76_031108, gene-QYE76_036515
Poaceae	Oryza coarctata	8	Oco03G006600, Oco04G006910, Oco11G014230, Oco12G014410 ... Oco15G012590, Oco16G010000, Oco17G006920, Oco18G007080
Poaceae	Oryza sativa	4	LOC_Os02g14730.1, LOC_Os06g44380.1, LOC_Os08g37350.1 ... LOC_Os09g28940.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G208900, gene-BS78_04G101500 ... gene-BS78_07G167300, gene-BS78_10G212400
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0206428, Pt_Chr0401452, Pt_Chr0403278, Pt_Chr0404233 ... Pt_Chr0701806, Pt_Chr0701839
Poaceae	Sporobolus alterniflorus	14	Chr02G031210, Chr05G008930, Chr06G032000, Chr0G000410 ... Chr0G013550, Chr0G028140, Chr0G028920, Chr10G019360, Chr11G003270, Chr15G023440, Chr16G015900, Chr17G015310, Chr20G003940, Chr29G003780
Poaceae	Thinopyrum elongatum	5	Tel5E01G395200, Tel5E01G664800, Tel6E01G407100 ... Tel7E01G489600, Tel7E01G853500
Poaceae	Triticum dicoccoides	8	gene_TRIDC5AG038540, gene_TRIDC5BG040600 ... gene_TRIDC6AG028430, gene_TRIDC6BG035780, gene_TRIDC7AG037560, gene_TRIDC7AG069740, gene_TRIDC7BG028320, gene_TRIDC7BG064180
Poaceae	Triticum aestivum	12	TraesCS5A02G246000.3, TraesCS5B02G243400.1 ... TraesCS5D02G252600.2, TraesCS6A02G192600.1, TraesCS6B02G231700.4, TraesCS6D02G179700.1, TraesCS7A02G282200.4, TraesCS7A02G498400.1, TraesCS7B02G179000.2, TraesCS7B02G405400.1, TraesCS7D02G280800.4, TraesCS7D02G485600.1
Poaceae	Zea mays	7	Zm00001eb038400_P001, Zm00001eb180290_P001 ... Zm00001eb204570_P002, Zm00001eb238660_P002, Zm00001eb241820_P001, Zm00001eb274940_P001, Zm00001eb315400_P002
Poaceae	Zoysia japonica	6	nbis-gene-17232, nbis-gene-19624, nbis-gene-34211 ... nbis-gene-47691, nbis-gene-53133, nbis-gene-9865
Poaceae	Zoysia macrostachya	6	Zma_g12507, Zma_g15405, Zma_g23143, Zma_g24240, Zma_g30923 ... Zma_g32697
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2220, evm.TU.LG03.1457, evm.TU.LG04.1888 ... evm.TU.LG06.463, evm.TU.LG12.124, evm.TU.LG14.1397, evm.TU.LG18.333, evm.TU.LG26.707
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g13980, gene.Posoc04g00230, gene.Posoc04g17210
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.958, evm.TU.Scaffold_6_RagTag.1706 ... evm.TU.Scaffold_7_RagTag.927, evm.TU.Scaffold_8_RagTag.813, evm.TU.Scaffold_9_RagTag.84
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-13532, nbisL1-mrna-17463, nbisL1-mrna-19391 ... nbisL1-mrna-22103, nbisL1-mrna-9426
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18068, nbisL1-mrna-20773, nbisL1-mrna-20875 ... nbisL1-mrna-4917
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12063, nbisL1-mrna-20537, nbisL1-mrna-6756 ... nbisL1-mrna-7604, nbisL1-mrna-9193
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.709, evm.TU.utg000003l.63 ... evm.TU.utg000004l.236, evm.TU.utg000011l.1035, evm.TU.utg000018l.478
Rhizophoraceae	Kandelia obovata	5	Maker00003662, Maker00004226, Maker00007765, Maker00010553 ... Maker00017616
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-11506, nbisL1-mrna-13053, nbisL1-mrna-15390 ... nbisL1-mrna-3704, nbisL1-mrna-6687
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10172, nbisL1-mrna-17036, nbisL1-mrna-21623 ... nbisL1-mrna-7750
Salicaceae	Populus euphratica	9	populus_peu00710, populus_peu00711, populus_peu04620 ... populus_peu13041, populus_peu13042, populus_peu14554, populus_peu17795, populus_peu17801, populus_peu32188
Solanaceae	Lycium barbarum	4	gene-LOC132604281, gene-LOC132618781, gene-LOC132627618 ... gene-LOC132635607
Solanaceae	Solanum chilense	3	SOLCI000351300, SOLCI002313400, SOLCI003043700
Solanaceae	Solanum pennellii	4	gene-LOC107007383, gene-LOC107017022, gene-LOC107025893 ... gene-LOC107028768
Tamaricaceae	Reaumuria soongarica	4	STRG.5897_chr02_+, STRG.9810_chr06_-, gene_16397, gene_6405
Tamaricaceae	Tamarix chinensis	3	TC01G0957, TC03G3010, TC09G2512
Zosteraceae	Zostera marina	5	Zosma01g07240.v3.1, Zosma03g34580.v3.1, Zosma05g27010.v3.1 ... Zosma06g25230.v3.1, Zosma06g25240.v3.1