Basic Information
Locus ID:
Sbi_jg4373
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 5019550 | 5031012 | + | Sbi_jg4373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 55,219.74 Da | 25.46 | 102.63 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 362 | 8.48749E-27 | - |
| Pfam | PF00168 | C2 domain | 264 | 361 | 3.6E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 5.6E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 391 | 2.7E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 419 | 1.8E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 2.5E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.807316 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 20.790176 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 3.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 3.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 3.0E-5 | IPR000008 |
| Coils | Coil | Coil | 398 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_021748091.1 | synaptotagmin-4-like [Chenopodium quinoa] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RHY5 | Synaptotagmin-5 OS=Spinacia oleracea OX=3562 GN=SOVF_070370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology