halophFGD

Basic Information

Locus ID: Sbi_jg43620

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000013l	6463038	6464748	-	Sbi_jg43620

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.27	43,644.19 Da	32.68	92.52	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	9	48	1.1E-6	IPR001810
SUPERFAMILY	SSF48452	TPR-like	305	337	8.85E-5	IPR011990
SUPERFAMILY	SSF81383	F-box domain	6	49	4.71E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	3	44	3.2E-6	-
SMART	SM00256	fbox_2	8	48	0.0012	IPR001810
ProSiteProfiles	PS50005	TPR repeat profile.	305	338	9.2339	IPR019734

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021758808.1	putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa]	0
TrEMBL	A0A803LYJ3	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	4	Ah008549, Ah008600, Ah008601, Ah008613
Amaranthaceae	Beta vulgaris	1	BVRB_8g191430
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg30187, Sbi_jg42307, Sbi_jg43620, Sbi_jg44894
Amaranthaceae	Salicornia europaea	2	Seu_jg18290, Seu_jg27235
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00026239, GOSA_00026240
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000008467, gene:ENSEOMG00000011066 ... gene:ENSEOMG00000011913, gene:ENSEOMG00000027597, gene:ENSEOMG00000031581, gene:ENSEOMG00000041481, gene:ENSEOMG00000042965
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0005750, CQ.Regalona.r1.4AG0021520 ... CQ.Regalona.r1.4AG0021550, CQ.Regalona.r1.4AG0021790, CQ.Regalona.r1.4AG0021860, CQ.Regalona.r1.4BG0022490, CQ.Regalona.r1.4BG0022820
Poaceae	Echinochloa crus-galli	47	AH01.4507, AH01.746, AH02.1029, AH02.611, AH02.85, AH04.1736 ... AH05.1079, AH05.3857, AH06.1260, AH08.1530, AH08.1956, BH01.2045, BH02.1169, BH02.1170, BH02.603, BH04.1728, BH05.1124, BH05.2116, BH05.2119, BH05.2120, BH05.3919, BH05.3923, BH06.1307, BH06.1308, BH06.1309, BH06.467, BH08.1472, BH08.2055, CH01.5125, CH01.5126, CH01.800, CH02.87, CH02.88, CH02.93, CH03.1419, CH03.3159, CH05.2184, CH05.4137, CH06.1450, CH08.1716, CH08.2227, CH08.2228, CH08.2230, CH08.2231, CH08.2232, Contig192.147, Contig328.97
Poaceae	Eleusine coracana subsp. coracana	31	gene-QOZ80_1AG0027520, gene-QOZ80_1BG0048530 ... gene-QOZ80_1BG0054320, gene-QOZ80_1BG0054330, gene-QOZ80_1BG0077690, gene-QOZ80_2AG0129600, gene-QOZ80_2AG0133540, gene-QOZ80_2BG0184860, gene-QOZ80_2BG0189070, gene-QOZ80_2BG0205830, gene-QOZ80_3AG0239020, gene-QOZ80_3AG0239030, gene-QOZ80_3AG0239040, gene-QOZ80_3AG0245640, gene-QOZ80_3AG0245650, gene-QOZ80_3BG0282480, gene-QOZ80_3BG0282490, gene-QOZ80_3BG0286690, gene-QOZ80_3BG0288940, gene-QOZ80_3BG0288950, gene-QOZ80_3BG0288960, gene-QOZ80_3BG0288970, gene-QOZ80_5AG0369430, gene-QOZ80_5BG0416660, gene-QOZ80_5BG0417130, gene-QOZ80_6AG0518820, gene-QOZ80_6AG0518840, gene-QOZ80_6AG0518850, gene-QOZ80_6BG0470900, gene-QOZ80_6BG0470950, gene-QOZ80_8AG0629140
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.2HG0135030.1, HORVU.MOREX.r3.3HG0235230.1 ... HORVU.MOREX.r3.3HG0235510.1, HORVU.MOREX.r3.3HG0235520.1, HORVU.MOREX.r3.3HG0250520.1, HORVU.MOREX.r3.3HG0250540.1, HORVU.MOREX.r3.3HG0250550.1, HORVU.MOREX.r3.3HG0257080.1, HORVU.MOREX.r3.7HG0707820.1
Poaceae	Lolium multiflorum	1	gene-QYE76_051742
Poaceae	Oryza coarctata	12	Oco01G006330, Oco01G006510, Oco01G006520, Oco02G006430 ... Oco02G006650, Oco02G006670, Oco02G006690, Oco02G006730, Oco06G013670, Oco09G017830, Oco10G005420, Oco13G015140
Poaceae	Oryza sativa	19	LOC_Os01g13810.1, LOC_Os01g13860.1, LOC_Os01g13870.1 ... LOC_Os01g14170.1, LOC_Os01g14180.1, LOC_Os01g14220.1, LOC_Os01g14280.1, LOC_Os01g14310.1, LOC_Os01g14320.1, LOC_Os01g14340.1, LOC_Os03g02090.1, LOC_Os03g21600.2, LOC_Os03g47920.1, LOC_Os03g53440.1, LOC_Os05g02100.1, LOC_Os05g18660.1, LOC_Os06g06610.1, LOC_Os09g27670.1, LOC_Os12g06550.1
Poaceae	Paspalum vaginatum	25	gene-BS78_01G096200, gene-BS78_01G436000, gene-BS78_K061500 ... gene-BS78_03G239600, gene-BS78_05G174100, gene-BS78_07G178600, gene-BS78_08G043300, gene-BS78_08G043400, gene-BS78_08G043500, gene-BS78_08G043700, gene-BS78_08G044300, gene-BS78_08G044400, gene-BS78_08G044800, gene-BS78_08G134200, gene-BS78_08G134400, gene-BS78_08G134500, gene-BS78_08G134600, gene-BS78_08G134700, gene-BS78_08G134800, gene-BS78_10G125000, gene-BS78_10G125200, gene-BS78_10G125500, gene-BS78_10G129300, gene-BS78_10G129400, gene-BS78_K215900
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0205312, Pt_Chr0205413, Pt_Chr0400740, Pt_Chr0400782 ... Pt_Chr0603755, Pt_Chr0603838, Pt_Chr0604103, Pt_Chr0604133, Pt_Chr0604189, Pt_Chr0604190, Pt_Chr0604191
Poaceae	Sporobolus alterniflorus	13	Chr01G027770, Chr01G032920, Chr02G010320, Chr02G026180 ... Chr09G014620, Chr0G006000, Chr12G006660, Chr12G011660, Chr13G010640, Chr14G006110, Chr21G005660, Chr21G005670, Chr24G005300
Poaceae	Thinopyrum elongatum	13	Tel3E01G176000, Tel3E01G176500, Tel3E01G176700 ... Tel3E01G272200, Tel3E01G287600, Tel3E01G288500, Tel3E01G288700, Tel3E01G288800, Tel3E01G289300, Tel3E01G296400, Tel3E01G324700, Tel7E01G846400, Tel7E01G846500
Poaceae	Triticum dicoccoides	12	gene_TRIDC3AG022110, gene_TRIDC3AG022220 ... gene_TRIDC3AG022250, gene_TRIDC3AG022970, gene_TRIDC3BG016510, gene_TRIDC3BG025640, gene_TRIDC3BG025690, gene_TRIDC3BG025730, gene_TRIDC3BG027080, gene_TRIDC3BG029970, gene_TRIDC4BG031630, gene_TRIDC7AG069210
Poaceae	Triticum aestivum	37	TraesCS2B02G429700.1, TraesCS2D02G214400.1 ... TraesCS3A02G101000.1, TraesCS3A02G161600.1, TraesCS3A02G162200.1, TraesCS3A02G162300.1.cds1, TraesCS3A02G162400.1, TraesCS3A02G162700.1.cds1, TraesCS3A02G162800.1, TraesCS3A02G167900.1, TraesCS3B02G118400.1, TraesCS3B02G118500.1, TraesCS3B02G182900.1, TraesCS3B02G192100.1, TraesCS3B02G192900.1, TraesCS3B02G193300.1, TraesCS3B02G193600.1, TraesCS3B02G193700.1, TraesCS3B02G193800.1.cds1, TraesCS3B02G193900.2, TraesCS3B02G198400.1, TraesCS3B02G218000.1, TraesCS3D02G102400.1, TraesCS3D02G164100.1, TraesCS3D02G168800.1, TraesCS3D02G170100.1, TraesCS3D02G170200.1.cds1, TraesCS3D02G174100.1, TraesCS3D02G192200.1, TraesCS3D02G192300.1, TraesCS4A02G123200.1, TraesCS4B02G181200.1, TraesCS4D02G182700.1, TraesCS7A02G495200.1.cds1, TraesCS7A02G495300.1.cds1, TraesCS7B02G402000.1, TraesCS7D02G482700.1.cds1
Poaceae	Zea mays	19	Zm00001eb083050_P001, Zm00001eb083060_P001 ... Zm00001eb083080_P001, Zm00001eb083090_P001, Zm00001eb083100_P001, Zm00001eb119370_P001, Zm00001eb119380_P001, Zm00001eb130660_P001, Zm00001eb130840_P001, Zm00001eb192970_P001, Zm00001eb234910_P001, Zm00001eb240250_P001, Zm00001eb240260_P001, Zm00001eb240270_P001, Zm00001eb240290_P001, Zm00001eb240300_P001, Zm00001eb284040_P001, Zm00001eb284050_P002, Zm00001eb284060_P001
Poaceae	Zoysia japonica	7	nbis-gene-28974, nbis-gene-28979, nbis-gene-28982 ... nbis-gene-28985, nbis-gene-28986, nbis-gene-3515, nbis-gene-3516
Poaceae	Zoysia macrostachya	5	Zma_g29564, Zma_g29566, Zma_g29567, Zma_g31804, Zma_g3768