Basic Information
Locus ID:
Sbi_jg43521
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 4809335 | 4834567 | - | Sbi_jg43521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 175,377.80 Da | 42.42 | 91.61 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 274 | 5.68E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 278 | 1.9E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 0.0081 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 273 | 9.171722 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1165 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50590.2 | - | 0 |
| RefSeq | XP_021851402.1 | uncharacterized protein LOC110790961 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RU49 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_028230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40059 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23922 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032204 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30077, Sbi_jg43521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18374 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004148, GOSA_00004150 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66141, Sgl70456 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012630, gene:ENSEOMG00000018342 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005180, CQ.Regalona.r1.2BG0004590 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30206670, pistato.v30206680 |
| Apiaceae | Apium graveolens | 2 | Ag4G01074, Ag4G01083 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G004080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706397 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1655.V1.1, AsparagusV1_04.1656.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16875 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G50590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010058m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g11620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g064460.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1292 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10030, nbisL1-mrna-6626 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2171 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023956 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36287 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1117, BH01.1576, CH01.1645 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028032 |
| Poaceae | Oryza coarctata | 2 | Oco17G004520, Oco18G004560 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g24260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G155700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402312, Pt_Chr0404152 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G000620, Chr11G024590, Chr14G000270, Chr14G000620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G056300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG072090, gene_TRIDC7AG000880 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G485300.1, TraesCS7A02G009900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051800_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40227, nbis-gene-51219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28981, Zma_g31224 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.589, evm.TU.LG06.751, evm.TU.LG25.738 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g16880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1898, evm.TU.Scaffold_6_RagTag.1899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17114 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11886, nbisL1-mrna-11887 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1156, evm.TU.utg000011l.1157 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007718 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15519, nbisL1-mrna-15520 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3193 |
| Salicaceae | Populus euphratica | 5 | populus_peu14333, populus_peu14335, populus_peu23419 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622073 |
| Solanaceae | Solanum chilense | 1 | SOLCI003142400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011004 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3424, gene_8113 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1702 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34690.v3.1, Zosma03g34700.v3.1 |