Basic Information
Locus ID:
Sbi_jg43233
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WRKY Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 730561 | 735600 | + | Sbi_jg43233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 60,912.29 Da | 46.09 | 45.71 | -1.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 253 | 308 | 3.9E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 435 | 492 | 5.3E-25 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 251 | 311 | 4.05E-26 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 426 | 494 | 7.85E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 419 | 495 | 1.9E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 246 | 312 | 7.0E-28 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 434 | 493 | 5.7E-39 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 252 | 310 | 9.2E-36 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 429 | 494 | 37.676926 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 247 | 311 | 24.294273 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 321 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_010670218.3 | probable WRKY transcription factor 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QGS9 | WRKY transcription factor OS=Spinacia oleracea OX=3562 GN=SOVF_180300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology