Basic Information
Locus ID:
Sbi_jg42952
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 93419680 | 93425009 | - | Sbi_jg42952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 49,067.88 Da | 34.30 | 125.48 | 0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 61 | 426 | 2.03396E-42 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 67 | 386 | 5.2E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 67 | 430 | 4.71E-29 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 431 | 7.7E-30 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 22 | 432 | 9.357021 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 154 | 175 | 8.6E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 69 | 85 | 8.6E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 310 | 331 | 8.6E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 370 | 393 | 8.6E-7 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021842890.1 | hippocampus abundant transcript-like protein 1 isoform X1 [Spinacia oleracea] | 0 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LJ67 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology