Basic Information
Locus ID:
Sbi_jg42928
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 93095862 | 93098871 | - | Sbi_jg42928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 24,681.44 Da | 56.54 | 81.00 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 42 | 219 | 1.26291E-100 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 42 | 148 | 6.0E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 44 | 175 | 2.62E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 27 | 219 | 1.6E-68 | - |
| SMART | SM00232 | pad1_6 | 44 | 172 | 2.4E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 45 | 173 | 28.999321 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_021842922.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Spinacia oleracea] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RVL5 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology