Basic Information
Locus ID:
Sbi_jg42732
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 90421585 | 90433554 | - | Sbi_jg42732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 152,855.83 Da | 36.63 | 106.45 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 179 | 466 | 1.70517E-88 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 794 | 1084 | 5.09849E-76 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1107 | 1328 | 2.51072E-119 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 491 | 696 | 2.08885E-96 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 797 | 1035 | 1.8E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1126 | 1275 | 5.2E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 518 | 648 | 1.7E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 179 | 445 | 3.2E-20 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1101 | 1336 | 1.78E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 171 | 473 | 1.57E-26 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 794 | 1095 | 9.16E-44 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 709 | 6.52E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 759 | 1090 | 6.8E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 143 | 475 | 9.8E-42 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 488 | 745 | 8.7E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1092 | 1346 | 4.4E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 522 | 696 | 1.7E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1135 | 1327 | 1.9E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 796 | 1072 | 31.028948 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1109 | 1344 | 17.507135 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 179 | 458 | 29.502123 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 491 | 719 | 19.207808 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 621 | 635 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021744390.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology