Basic Information
Locus ID:
Sbi_jg42665
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 89492217 | 89493883 | + | Sbi_jg42665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 46,806.47 Da | 49.36 | 68.06 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 353 | 392 | 1.1E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 153 | 271 | 7.19E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 346 | 398 | 2.79E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 86 | 147 | 1.31E-5 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 139 | 282 | 2.3E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 340 | 397 | 1.4E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 350 | 392 | 10.945868 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 429 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010682773.1 | F-box protein At1g67340 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0F6 | MYND-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_013430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology