Basic Information
Locus ID:
Sbi_jg42441
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 85603352 | 85617591 | - | Sbi_jg42441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 113,824.78 Da | 33.47 | 86.83 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 39 | 314 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 896 | 1000 | 1.8E-11 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 449 | 2.0E-20 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 40 | 351 | 2.1E-96 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 600 | 814 | 2.2E-45 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 459 | 4.9E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 28 | 353 | 1.17E-111 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 456 | 1003 | 6.28E-140 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 881 | 1008 | 1.0E-34 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 456 | 5.0E-19 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 7.6E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 598 | 1.4E-27 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 862 | 3.4E-91 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 39 | 319 | 6.7E-124 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 432 | 1.9E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021851647.1 | alpha-mannosidase At3g26720-like [Spinacia oleracea] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZI9 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology