Basic Information
Locus ID:
Sbi_jg42440
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 85529837 | 85569378 | - | Sbi_jg42440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 116,318.50 Da | 34.93 | 82.72 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 35 | 326 | 1.3648E-171 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 369 | 460 | 6.2E-21 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 626 | 827 | 2.5E-41 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 910 | 1016 | 2.8E-9 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 36 | 363 | 1.1E-92 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 24 | 364 | 7.56E-103 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 473 | 1020 | 3.92E-128 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 367 | 461 | 3.27E-28 | IPR028995 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 410 | 466 | 9.8E-23 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 610 | 876 | 1.3E-85 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 896 | 1026 | 5.4E-32 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 332 | 409 | 2.9E-29 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 589 | 3.7E-26 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 35 | 331 | 2.1E-117 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 368 | 442 | 4.5E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021736050.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RLN6 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_052620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology