Basic Information
Locus ID:
Sbi_jg42307
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 83135288 | 83139371 | - | Sbi_jg42307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 61,966.86 Da | 28.78 | 90.55 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 46 | 2.1E-5 | IPR001810 |
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 243 | 347 | 1.9E-6 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 412 | 525 | 4.2E-26 | IPR011990 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 60 | 6.41E-9 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 407 | 538 | 6.5E-32 | IPR011990 |
| SMART | SM00028 | tpr_5 | 412 | 445 | 0.17 | IPR019734 |
| SMART | SM00028 | tpr_5 | 479 | 512 | 19.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 446 | 478 | 0.24 | IPR019734 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 2.1E-5 | IPR001810 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 412 | 445 | 9.3814 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758808.1 | putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa] | 0 |
| Q60676 | Serine/threonine-protein phosphatase 5 OS=Mus musculus OX=10090 GN=Ppp5c PE=1 SV=3 | 0 | |
| TrEMBL | A0A803LYJ3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology