Basic Information
Locus ID:
Sbi_jg42089
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ribonuclease H protein At1g65750-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 76697392 | 76700533 | - | Sbi_jg42089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 34,799.78 Da | 42.17 | 81.89 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 10 | 79 | 7.9E-15 | IPR026960 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 173 | 296 | 2.4E-9 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 171 | 298 | 5.49E-17 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 155 | 301 | 1.1E-14 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021838584.1 | uncharacterized protein LOC110778326 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803MUM1 | Heme O synthase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 103 | Sbi_jg1018, Sbi_jg1323, Sbi_jg14120, Sbi_jg14340, Sbi_jg3658 ... |