Basic Information
Locus ID:
Sbi_jg4175
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 1971585 | 1980074 | + | Sbi_jg4175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 121,428.26 Da | 49.23 | 69.98 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 567 | 871 | 1.42636E-130 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 568 | 870 | 1.9E-41 | IPR001394 |
| Pfam | PF01753 | MYND finger | 79 | 116 | 1.3E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 564 | 875 | 4.71E-82 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 75 | 118 | 5.06E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 560 | 882 | 4.5E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 122 | 6.4E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 568 | 873 | 48.915394 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 79 | 116 | 11.412541 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 569 | 584 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1040 | 1114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1043 | 1079 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 314 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology