Basic Information
Locus ID:
Sbi_jg41209
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 24802914 | 24809278 | + | Sbi_jg41209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 62,726.91 Da | 24.55 | 88.26 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 381 | 564 | 2.23192E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 23 | 181 | 2.75584E-91 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 20 | 185 | 1.9E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 427 | 552 | 9.1E-16 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 216 | 331 | 1.2E-21 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 381 | 576 | 1.97E-42 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 211 | 357 | 2.4E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 19 | 194 | 1.13E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 206 | 368 | 8.6E-43 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 17 | 191 | 8.7E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 375 | 563 | 5.5E-56 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 15 | 576 | 5.7E-208 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_021852848.1 | pyruvate decarboxylase 1 [Spinacia oleracea] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D2Z8W1 | pyruvate decarboxylase OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G167100v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology