Basic Information
Locus ID:
Sbi_jg40868
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000005l | 8548823 | 8596385 | + | Sbi_jg40868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 76,490.32 Da | 41.69 | 80.30 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 381 | 649 | 7.92162E-98 | - |
| Pfam | PF00069 | Protein kinase domain | 377 | 643 | 5.4E-50 | IPR000719 |
| Pfam | PF00314 | Thaumatin family | 34 | 255 | 3.7E-56 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 29 | 256 | 1.02E-57 | IPR037176 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 360 | 677 | 8.36E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 450 | 7.8E-37 | - |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 28 | 255 | 2.4E-64 | IPR037176 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 655 | 1.3E-61 | - |
| SMART | SM00220 | serkin_6 | 375 | 645 | 1.7E-39 | IPR000719 |
| SMART | SM00205 | tha2 | 30 | 255 | 8.0E-47 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 27 | 255 | 30.850603 | IPR001938 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 375 | 655 | 40.343395 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 381 | 403 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 496 | 508 | - | IPR008271 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 54 | 63 | 3.9E-10 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 29 | 41 | 3.9E-10 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 245 | 254 | 3.9E-10 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 133 | 149 | 3.9E-10 | IPR001938 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_021719634.1 | cysteine-rich receptor-like protein kinase 15 [Chenopodium quinoa] | 0 |
| O65468 | Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CRK8 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803M241 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22061 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40868, Sbi_jg40875 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1602, Seu_jg1603, Seu_jg4259 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017178 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl46180, Sgl46197, Sgl50876, Sgl50880, Sgl50932 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010508, gene:ENSEOMG00000031315 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0002470, CQ.Regalona.r1.8BG0002450 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1797, evm.TU.LG18.811, evm.TU.LG20.1079 ... |