Basic Information
Locus ID:
Sbi_jg40480
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000029l | 8154955 | 8156430 | + | Sbi_jg40480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 56,210.53 Da | 39.02 | 103.77 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 58 | 8.5E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 61 | 8.63E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 74 | 381 | 5.0E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 64 | 9.9E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 89 | 8.59666 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26340.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_010677157.2 | FBD-associated F-box protein At5g60610-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q8H1R7 | F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana OX=3702 GN=At4g26340 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUC7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40480, Sbi_jg50491, Sbi_jg50492 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2070 |