Basic Information
Locus ID:
Sbi_jg39953
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000024l | 52968806 | 52982685 | + | Sbi_jg39953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 36,743.40 Da | 47.90 | 74.38 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 247 | 312 | 6.60099E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 26 | 110 | 1.33393E-39 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 28 | 110 | 1.2E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 247 | 315 | 2.6E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 19 | 121 | 1.7E-30 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 238 | 317 | 1.83E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 120 | 9.5E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 229 | 321 | 5.1E-20 | IPR036910 |
| SMART | SM01014 | ARID_2 | 20 | 110 | 1.5E-29 | - |
| SMART | SM00398 | hmgende2 | 246 | 316 | 4.9E-17 | IPR009071 |
| SMART | SM00501 | bright_3 | 24 | 115 | 1.3E-28 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 247 | 315 | 14.817918 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 114 | 25.8281 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010692487.1 | high mobility group B protein 9 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BEL5 | High mobility group B protein 15-like OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_1g020520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology