Basic Information
Locus ID:
Sbi_jg3958
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX MLL subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 43717238 | 43729504 | + | Sbi_jg3958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 117,193.87 Da | 47.73 | 67.27 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10518 | SET_SETD1-like | 878 | 1026 | 3.39388E-72 | - |
| CDD | cd15495 | PHD_ATX3_4_5_like | 595 | 641 | 9.77641E-22 | IPR042011 |
| CDD | cd15517 | PHD_TCF19_like | 418 | 468 | 1.73244E-7 | - |
| Pfam | PF00855 | PWWP domain | 233 | 331 | 2.1E-14 | IPR000313 |
| Pfam | PF13832 | PHD-zinc-finger like domain | 649 | 761 | 1.0E-27 | - |
| Pfam | PF00856 | SET domain | 899 | 1004 | 6.9E-18 | IPR001214 |
| Pfam | PF13831 | PHD-finger | 608 | 642 | 1.6E-12 | - |
| Pfam | PF00628 | PHD-finger | 417 | 470 | 9.6E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 414 | 473 | 2.47E-8 | IPR011011 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 228 | 333 | 1.26E-18 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 594 | 658 | 5.6E-11 | IPR011011 |
| SUPERFAMILY | SSF82199 | SET domain | 855 | 1027 | 6.15E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 646 | 764 | 3.4E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 400 | 472 | 6.9E-9 | IPR013083 |
| Gene3D | G3DSA:2.30.30.140 | - | 221 | 343 | 2.4E-20 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 789 | 1030 | 4.0E-51 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 591 | 645 | 5.6E-8 | IPR013083 |
| SMART | SM00317 | set_7 | 888 | 1011 | 1.9E-33 | IPR001214 |
| SMART | SM00249 | PHD_3 | 417 | 469 | 6.5E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 706 | 762 | 0.017 | IPR001965 |
| SMART | SM00249 | PHD_3 | 595 | 642 | 3.6E-4 | IPR001965 |
| SMART | SM00508 | PostSET_3 | 1014 | 1030 | 8.4E-4 | IPR003616 |
| ProSiteProfiles | PS50280 | SET domain profile. | 888 | 1005 | 18.060364 | IPR001214 |
| ProSiteProfiles | PS50868 | Post-SET domain profile. | 1014 | 1030 | 9.281633 | IPR003616 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 415 | 471 | 9.2586 | IPR019787 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 647 | 762 | 31.46954 | IPR034732 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 235 | 304 | 9.693599 | IPR000313 |
| ProSiteProfiles | PS51566 | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 1030 | 391.805298 | IPR025780 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 593 | 644 | 9.0539 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 596 | 641 | - | IPR019786 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61740.2 | SET domain protein 14. | 0 |
| RefSeq | XP_010667363.1 | histone-lysine N-methyltransferase ATX3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M364 | Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana OX=3702 GN=ATX3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QGG1 | Histone-lysine N-methyltransferase ATX3 OS=Spinacia oleracea OX=3562 GN=SOVF_187590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13889, jg26921 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23546, gene_3304 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018632, Ah022859 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g003150, BVRB_3g052080 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15093, Sbi_jg3958, Sbi_jg49172, Sbi_jg55908 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26405, Seu_jg6071 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00000578, GOSA_00000580, GOSA_00020060 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01350, Sgl06427, Sgl06504, Sgl10912, Sgl16266 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001146, gene:ENSEOMG00000015979 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0002130, CQ.Regalona.r1.2BG0026180 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30005780, pistato.v30164460 |
| Apiaceae | Apium graveolens | 4 | Ag2G02092, Ag3G02040, Ag6G00235, Ag6G00261 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G013090, COCNU_06G002700, COCNU_14G000250 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702976, gene-LOC103713329, gene-LOC120108262 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2598.V1.1, AsparagusV1_05.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G29884, Ftri18G17751, Ftri5G04961 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61740.1, AT4G27910.1, AT5G53430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005766m.g.v1.0, Thhalv10012524m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g01630.v2.2, Sp6g15560.v2.2, Sp7g25880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g031770.2N, BniB06g052810.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1266, Ceq09G1634 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1307, Cgl09G1768 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12460, gene.Cymno02g12610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0308s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g25870, gene.Thate07g15770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11730, nbisL1-mrna-6156, nbisL1-mrna-9536 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.706, evm.TU.LG05.977, evm.TU.LG09.503 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017875, Pov_00041147 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03663, Lb1G04196 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.178, AH02.2566, BH02.173, BH02.2667, CH02.203 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0001680, gene-QOZ80_1AG0026990 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0244900.1, HORVU.MOREX.r3.3HG0276610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051349 |
| Poaceae | Oryza coarctata | 6 | Oco01G005160, Oco01G005170, Oco01G016110, Oco02G005210 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g11952.1, LOC_Os01g11960.1, LOC_Os01g46700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G015300, gene-BS78_03G215700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404342, Pt_Chr0503283, Pt_Chr0604993 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G013960, Chr03G000190, Chr03G012330, Chr05G019840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G242900, Tel3E01G401900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG019070, gene_TRIDC3AG035470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G143300.2, TraesCS3A02G237200.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb119830_P001, Zm00001eb158060_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-24332, nbis-gene-25942, nbis-gene-29050 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10781, Zma_g7229, Zma_g8343, Zma_g9554 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1973, evm.TU.LG11.1663, evm.TU.LG19.1278 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g23240, gene.Posoc08g13740 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60378.4, evm.TU.60378.5, evm.TU.Scaffold_1_RagTag.539 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21614, nbisL1-mrna-7504 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2559, nbisL1-mrna-937 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5647, nbisL1-mrna-7401 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.206, evm.TU.utg000012l.389 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011473, Maker00017799 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1703, nbisL1-mrna-8408 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5437, nbisL1-mrna-746 |
| Salicaceae | Populus euphratica | 4 | populus_peu27564, populus_peu28040, populus_peu29483 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631391, gene-LOC132632069, gene-LOC132645451 |
| Solanaceae | Solanum chilense | 3 | SOLCI000802600, SOLCI001699900, SOLCI004966200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008267, gene-LOC107013606, gene-LOC107015255 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_5165, gene_731, gene_9968 |
| Tamaricaceae | Tamarix chinensis | 4 | TC03G1956, TC06G1518, TC08G1398, TC09G2333 |
| Zosteraceae | Zostera marina | 2 | Zosma01g14670.v3.1, Zosma06g08050.v3.1 |