Basic Information
Locus ID:
Sbi_jg39306
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000024l | 39723390 | 39752906 | + | Sbi_jg39306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 94,749.01 Da | 37.07 | 96.97 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04841 | Vps16, N-terminal region | 9 | 415 | 1.0E-83 | IPR006926 |
| Pfam | PF04840 | Vps16, C-terminal region | 511 | 826 | 1.1E-66 | IPR006925 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 34 | 330 | 1.81E-8 | IPR036322 |
| Gene3D | G3DSA:1.10.150.780 | - | 647 | 741 | 3.7E-28 | IPR038132 |
| PIRSF | PIRSF007949 | Vps16 | 2 | 842 | 0.0 | IPR016534 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38020.1 | vacuoleless1 (VCL1). necessary for proper vacuole formation and morphogenesis in Arabidopsis | 0 |
| RefSeq | XP_021771510.1 | protein VACUOLELESS1-like [Chenopodium quinoa] | 0 |
| Q93VQ0 | Protein VACUOLELESS1 OS=Arabidopsis thaliana OX=3702 GN=VCL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RV61 | Protein VACUOLELESS1 OS=Spinacia oleracea OX=3562 GN=SOVF_025500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21266 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9915 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024725 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39306, Sbi_jg54640 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11155 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020538 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14719, Sgl14720, Sgl15100, Sgl15102, Sgl20228, Sgl20235 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013457, gene:ENSEOMG00000035222 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0015560, CQ.Regalona.r1.1BG0010120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013320 |
| Apiaceae | Apium graveolens | 1 | Ag3G00537 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G006530, COCNU_06G006540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722345 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2883.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G02670 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G38020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g20340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g006560.2N, BniB08g024150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1652 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1645 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09450 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.1144s00002.v1.0, Dusal.1144s00003.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6495 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1068, evm.TU.LG12.92 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004271 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04908 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2674, BH02.2748, CH02.3784 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0078030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0278400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018547, gene-QYE76_054450 |
| Poaceae | Oryza coarctata | 1 | Oco02G016870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G223800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605062, Pt_Chr0605078 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G013340, Chr03G013010, Chr03G013020, Chr05G020390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G411700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037150, gene_TRIDC3BG040780 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G247800.1, TraesCS3B02G271600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51721 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8393 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1285, evm.TU.LG04.1286, evm.TU.LG05.1816 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19980, gene.Posoc04g03540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1240 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11712 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20153 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11208 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.725 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013743 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9819 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19934 |
| Salicaceae | Populus euphratica | 3 | populus_peu14988, populus_peu14989, populus_peu32653 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616671, gene-LOC132618089 |
| Solanaceae | Solanum chilense | 1 | SOLCI000166700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026192 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8386_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1841 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27570.v3.1 |