Basic Information
Locus ID:
Sbi_jg39146
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000024l | 34665966 | 34668431 | + | Sbi_jg39146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 57,123.74 Da | 32.74 | 73.36 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 367 | 498 | 2.1892E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 186 | 317 | 1.05953E-31 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 6.82786E-45 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 367 | 497 | 5.3E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 186 | 317 | 3.5E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 3.0E-37 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 354 | 497 | 9.03E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 12 | 151 | 2.35E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 176 | 317 | 3.53E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 10 | 154 | 2.5E-50 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 351 | 498 | 3.0E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 169 | 316 | 1.6E-46 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 1.3E-39 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 186 | 318 | 2.5E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 367 | 499 | 4.8E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 175 | 318 | 48.675987 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 52.849731 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 356 | 499 | 46.068569 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021851045.1 | jacalin-related lectin 3-like [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5P4 | Jacalin-type lectin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology