Basic Information
Locus ID:
Sbi_jg38189
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 22455469 | 22464282 | - | Sbi_jg38189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 54,457.32 Da | 42.31 | 78.91 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 142 | 457 | 5.3E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 105 | 489 | 7.52E-121 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 98 | 487 | 1.9E-115 | IPR012334 |
| SMART | SM00710 | pbh1 | 379 | 400 | 2500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 350 | 371 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 297 | 318 | 3600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 270 | 296 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 320 | 340 | 7300.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 327 | 340 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010672584.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology