Basic Information
Locus ID:
Sbi_jg38186
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 22347680 | 22360609 | + | Sbi_jg38186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 124,669.10 Da | 63.46 | 54.70 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 689 | 818 | 1.89727E-60 | - |
| CDD | cd00201 | WW | 23 | 52 | 5.42392E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 494 | 664 | 1.5E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.7E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 701 | 809 | 7.0E-31 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.59E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 542 | 824 | 3.49E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 679 | 850 | 4.8E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 56 | 6.5E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 444 | 678 | 2.0E-89 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.6E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 489 | 692 | 6.3E-66 | IPR014001 |
| SMART | SM00490 | helicmild6 | 725 | 809 | 4.5E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 470 | 498 | 11.192639 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.4081 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 704 | 848 | 25.098572 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 501 | 675 | 31.213491 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 621 | 629 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1028 | 1062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 966 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 139 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010672591.1 | DEAD-box ATP-dependent RNA helicase 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology