Basic Information
Locus ID:
Sbi_jg3814
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Vacuolar protein sorting-associated protein 8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 41226085 | 41240307 | + | Sbi_jg3814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 215,301.08 Da | 40.50 | 89.49 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 1745 | 1793 | 2.38907E-5 | - |
| Pfam | PF12816 | Golgi CORVET complex core vacuolar protein 8 | 970 | 1152 | 3.8E-53 | IPR025941 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 436 | 594 | 2.11E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 429 | 605 | 4.6E-7 | IPR015943 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1745 | 1792 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 524 | 9.940341 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 502 | 516 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1880 | 1904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00800.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021845842.1 | vacuolar protein sorting-associated protein 8 homolog [Spinacia oleracea] | 0 |
| Q8N3P4 | Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens OX=9606 GN=VPS8 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803M377 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23492 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022770 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3814, Sbi_jg49066 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6174 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000662, GOSA_00000663 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10812, Sgl10813, Sgl16165, Sgl16166 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013925, gene:ENSEOMG00000034769 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30006540 |
| Apiaceae | Apium graveolens | 1 | Ag7G01395 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007990 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697565 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2271.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G17229 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028358m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g043590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0218 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0235 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01780 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1516, nbisL1-mrna-9556 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.617 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027916 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.219, AH07.235, BH07.295, CH03.4615, CH03.4617 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0099980, gene-QOZ80_2BG0153450 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0551440.1, HORVU.MOREX.r3.7HG0724670.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019899 |
| Poaceae | Oryza coarctata | 2 | Oco03G001370, Oco04G001240 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G113600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201216 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G035690, Chr06G035710, Chr06G035720, Chr15G026910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G187900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC6AG010060, gene_TRIDC6BG015100 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G082800.1, TraesCS6B02G114600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb230740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30067 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2088, evm.TU.LG06.224 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g09910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8686 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21220 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.763 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1292 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4841 |
| Salicaceae | Populus euphratica | 1 | populus_peu27494 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640575 |
| Solanaceae | Solanum chilense | 1 | SOLCI001506700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020383 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15180 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2397 |
| Zosteraceae | Zostera marina | 1 | Zosma02g15090.v3.1 |