Basic Information
Locus ID:
Sbi_jg38026
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 18124418 | 18137868 | - | Sbi_jg38026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 51,041.14 Da | 47.53 | 58.08 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 310 | 393 | 1.0E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 409 | 440 | 1.0E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 309 | 393 | 6.5E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 331 | - | - |
| Coils | Coil | Coil | 301 | 335 | - | - |
| Coils | Coil | Coil | 343 | 363 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_021730233.1 | uncharacterized protein LOC110697193 [Chenopodium quinoa] | 0 |
| TrEMBL | V9P4T0 | PAPA-1-like family protein OS=Suaeda liaotungensis OX=154002 GN=PAPA1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology