Basic Information
Locus ID:
Sbi_jg37942
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 15204353 | 15216509 | + | Sbi_jg37942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 57,101.82 Da | 30.42 | 83.65 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 226 | 514 | 8.76744E-57 | - |
| CDD | cd16656 | RING-Ubox_PRP19 | 3 | 54 | 1.5627E-29 | - |
| Pfam | PF08606 | Prp19/Pso4-like | 66 | 131 | 6.1E-30 | IPR013915 |
| Pfam | PF11789 | Zinc-finger of the MIZ type in Nse subunit | 1 | 42 | 2.4E-6 | IPR004181 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 514 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 294 | 4.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 206 | 514 | 3.24E-62 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 53 | 4.59E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | 1.4E-24 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 202 | 516 | 6.8E-84 | IPR015943 |
| SMART | SM00320 | WD40_4 | 387 | 425 | 3.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 467 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 384 | 0.047 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 1 | 66 | 8.1E-21 | IPR003613 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 3.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 515 | 0.0082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 252 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 294 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 349 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 70 | 26.565403 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 294 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 393 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 434 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 352 | 387 | 8.729241 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 371 | 385 | - | IPR019775 |
| Coils | Coil | Coil | 115 | 135 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.1 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_010670940.1 | pre-mRNA-processing factor 19 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QK88 | Pre-mRNA-processing factor 19 OS=Spinacia oleracea OX=3562 GN=SOVF_169810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12760, jg27737 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2995 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019168 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37942, Sbi_jg6081 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28229 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006161 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00906, Sgl05860, Sgl05984 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000791, gene:ENSEOMG00000030607 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0000870, CQ.Regalona.r1.3BG0000940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239760 |
| Apiaceae | Apium graveolens | 4 | Ag4G02764, Ag4G02765, Ag5G02616, Ag8G01454 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001300, COCNU_10G000960 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703895, gene-LOC103715421, gene-LOC120110797 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.200.V1.1, AsparagusV1_10.1891.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G18287 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04510.1, AT2G33340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007366m.g.v1.0, Thhalv10016510m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03340.v2.2, Sp4g15650.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g010770.2N, BniB06g022610.2N, BniB06g046370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1252 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1328 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02920 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0061s00009.v1.0, Dusal.0061s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.741 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025396 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11751 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1825, BH01.2137, CH01.2237 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127280, gene-QOZ80_2BG0182760 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0041060.1, HORVU.MOREX.r3.4HG0411750.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007654, gene-QYE76_011390, gene-QYE76_070891 ... |
| Poaceae | Oryza coarctata | 2 | Oco19G005680, Oco20G005590 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G210700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100151, Pt_Chr0100267, Pt_Chr0502534 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013180, Chr09G010580, Chr0G025950, Chr0G029600 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G276300, Tel4E01G558600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG022530, gene_TRIDC1BG027250 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G148000.1, TraesCS1B02G165900.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb046370_P001, Zm00001eb222190_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13355, Zma_g16168 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1383 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1308, evm.TU.Scaffold_6_RagTag.909 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15770, nbisL1-mrna-1624 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16149, nbisL1-mrna-6009 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2562, nbisL1-mrna-778 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.567, evm.TU.utg000019l.452 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002182, Maker00007127 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15196, nbisL1-mrna-6254 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2002, nbisL1-mrna-4305 |
| Salicaceae | Populus euphratica | 2 | populus_peu07567, populus_peu21598 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604335, gene-LOC132609225 |
| Solanaceae | Solanum chilense | 1 | SOLCI001763500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031322 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11613, gene_5283 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1462 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38330.v3.1 |