Basic Information
Locus ID:
Sbi_jg37867
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 12340749 | 12341561 | - | Sbi_jg37867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 30,848.71 Da | 40.71 | 96.70 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 58 | 129 | 1.60408E-6 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 58 | 130 | 4.73E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 131 | 202 | 4.96E-5 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 40 | 135 | 1.1E-7 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 56 | 129 | 10.680043 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019232995.1 | PREDICTED: polyubiquitin-like isoform X2 [Nicotiana attenuata] | 0 |
| TrEMBL | A0A1J6KC86 | Polyubiquitin 4 OS=Nicotiana attenuata OX=49451 GN=UBQ4_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |