Basic Information
Locus ID:
Sbi_jg37866
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 12027783 | 12037262 | - | Sbi_jg37866 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 42,479.78 Da | 31.81 | 97.43 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 160 | 228 | 0.00510574 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 233 | 299 | 6.43292E-6 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 140 | 229 | 6.08E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 207 | 300 | 8.06E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 229 | 303 | 4.1E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |