Basic Information
Locus ID:
Sbi_jg37865
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 11982781 | 11985499 | - | Sbi_jg37865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 32,898.89 Da | 27.52 | 104.17 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 218 | 285 | 6.28375E-4 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 86 | 137 | 9.70348E-6 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 140 | 214 | 1.19E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 215 | 285 | 4.73E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 83 | 141 | 5.63E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 214 | 286 | 2.3E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 63 | 143 | 1.3E-6 | - |
| SMART | SM00213 | ubq_7 | 63 | 139 | 0.095 | IPR000626 |
| SMART | SM00213 | ubq_7 | 216 | 287 | 2.0 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 63 | 137 | 8.633156 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 216 | 285 | 9.896129 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_021847649.1 | polyubiquitin 8-like [Spinacia oleracea] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |