Basic Information
Locus ID:
Sbi_jg37755
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000023l | 6731614 | 6738460 | + | Sbi_jg37755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 57,435.90 Da | 58.70 | 64.79 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 136 | 188 | 8.86809E-25 | - |
| Pfam | PF00412 | LIM domain | 136 | 190 | 4.6E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 285 | 503 | 3.5E-105 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 161 | 2.73E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 162 | 217 | 7.54E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 132 | 195 | 1.8E-14 | - |
| SMART | SM00726 | uim | 46 | 65 | 0.09 | IPR003903 |
| SMART | SM00132 | lim_4 | 135 | 187 | 1.4E-12 | IPR001781 |
| SMART | SM00726 | uim | 84 | 103 | 0.36 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 134 | 194 | 12.1672 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 84 | 103 | 9.2238 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 10.146433 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 136 | 170 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 456 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010680936.1 | protein DA1-related 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology