Basic Information
Locus ID:
Sbi_jg37535
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 121591146 | 121608079 | - | Sbi_jg37535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 99,214.07 Da | 36.76 | 86.71 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 1.02418E-54 | - |
| CDD | cd17920 | DEXHc_RecQ | 4 | 196 | 2.74659E-88 | - |
| Pfam | PF14493 | Helix-turn-helix domain | 651 | 745 | 5.9E-17 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 216 | 322 | 8.7E-20 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 9.1E-18 | IPR011545 |
| Pfam | PF09382 | RQC domain | 400 | 497 | 1.1E-20 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 545 | 610 | 1.7E-12 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 9.3E-14 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 1.0E-52 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 616 | 8.94E-16 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 498 | 8.84E-23 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 399 | 520 | 1.2E-31 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 398 | 5.3E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 5.4E-72 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 616 | 6.0E-15 | IPR044876 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 5.7E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 5.6E-30 | IPR014001 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 1.9E-18 | IPR018982 |
| SMART | SM00341 | hrdc7 | 540 | 620 | 7.3E-5 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 3.0E-148 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 21.782391 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 369 | 19.780571 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 540 | 620 | 18.453907 | IPR002121 |
| Coils | Coil | Coil | 512 | 532 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| P15043 | ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 | 0 | |
| TrEMBL | A0A0K9S2K9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_000900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology