Basic Information
Locus ID:
Sbi_jg37085
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 114103893 | 114110774 | - | Sbi_jg37085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 97,549.33 Da | 54.07 | 78.11 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 565 | 592 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 744 | 779 | 5.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 648 | 686 | 2.0E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 92 | 356 | 7.21E-20 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 562 | 881 | 5.07E-53 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 92 | 356 | 8.6E-25 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 539 | 884 | 3.8E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 558 | 593 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 643 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 827 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 779 | 1.9E-7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 66 | 345 | 3.6E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 646 | 686 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 838 | 882 | 320.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 653 | 688 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 653 | 688 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 345 | 9.149658 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 748 | 782 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 748 | 782 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 766 | 780 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 766 | 780 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 673 | 687 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 630 | 644 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BAN3 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology