Basic Information
Locus ID:
Sbi_jg36816
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 106485689 | 106493149 | - | Sbi_jg36816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 81,861.75 Da | 36.90 | 92.59 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 49 | 347 | 4.50483E-165 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 369 | 659 | 1.6E-26 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 363 | 664 | 5.49E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 48 | 347 | 2.62E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 362 | 663 | 1.7E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 346 | 1.1E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 49 | 348 | 35.011501 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 364 | 664 | 32.486149 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010675854.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD9 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology