Basic Information
Locus ID:
Sbi_jg3677
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 38742169 | 38747861 | + | Sbi_jg3677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 63,912.76 Da | 47.97 | 57.89 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 434 | 518 | 1.6E-17 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 535 | 565 | 2.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 433 | 518 | 3.2E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 181 | - | - |
| Coils | Coil | Coil | 439 | 464 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021768735.1 | uncharacterized protein LOC110733032 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology