Basic Information
Locus ID:
Sbi_jg36458
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 89461871 | 89472663 | + | Sbi_jg36458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 94,215.49 Da | 60.20 | 66.04 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 778 | 818 | 1.5402E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 776 | 823 | 1.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 778 | 824 | 5.55E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 764 | 829 | 4.6E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 779 | 818 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 265 | - | - |
| Coils | Coil | Coil | 708 | 728 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010694518.1 | uncharacterized protein LOC104907301 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QXY6 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_128930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology