Basic Information
Locus ID:
Sbi_jg36297
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 78314654 | 78315184 | - | Sbi_jg36297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 12,025.68 Da | 32.42 | 78.32 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 106 | 1.08E-13 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 13 | 107 | 1.8E-27 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 107 | 11.156687 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 34 | 57 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14640.1 | shaggy-like kinase 13. | 0 |
| RefSeq | XP_022740392.1 | shaggy-related protein kinase epsilon-like isoform X2 [Durio zibethinus] | 0 |
| Q8VZD5 | Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana OX=3702 GN=ASK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FJ08 | Protein kinase domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0141741mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah016390, Ah033370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36297, Sbi_jg36299 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl01217 |
| Brassicaceae | Brassica nigra | 1 | BniB07g029680.2N |
| Poaceae | Oryza coarctata | 2 | Oco06G029160, Oco23G009390 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G1045700, Tel2E01G622000, Tel3E01G579800 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG005820, gene_TRIDC7AG067580 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34434 |