Basic Information
Locus ID:
Sbi_jg36024
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 59895908 | 59897454 | + | Sbi_jg36024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 32,180.81 Da | 50.02 | 65.55 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2 | 108 | 5.18E-29 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 113 | 1.9E-28 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1 | 108 | 16.030558 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 281 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015084388.2 | uncharacterized protein LOC107027847 [Solanum pennellii] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LV14 | Integrase catalytic domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 15 | Sbi_jg13796, Sbi_jg18124, Sbi_jg19201, Sbi_jg19361 ... |