Basic Information
Locus ID:
Sbi_jg35799
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
LEC14B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 45458710 | 45495645 | - | Sbi_jg35799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 13,608.06 Da | 44.67 | 67.44 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 74 | 108 | 2.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 24 | 67 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 111 | 9.16E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 116 | 1.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 67 | 0.033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 77 | 117 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 77 | 117 | 11.544415 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_019106420.1 | LEC14B protein isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| O24467 | LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QN19 | LEC14B homolog OS=Spinacia oleracea OX=3562 GN=SOVF_165740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35799 |
| Apiaceae | Apium graveolens | 1 | Ag9G01819 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G09289 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062710.1 |
| Poaceae | Oryza coarctata | 1 | Oco09G002090 |