Basic Information
Locus ID:
Sbi_jg35582
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 32965034 | 32967073 | + | Sbi_jg35582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 74,959.82 Da | 42.84 | 84.40 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 197 | 234 | 6.12704E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 198 | 241 | 5.2E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 391 | 649 | 8.0E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 352 | 649 | 4.51E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 449 | 669 | 2.3E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 356 | 447 | 3.5E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 196 | 248 | 3.5E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 197 | 241 | 0.0095 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 374 | 653 | 32.371822 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 196 | 240 | 10.968242 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 271 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021746439.1 | protein LYK5-like [Chenopodium quinoa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NB60 | Protein LYK5-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology