HalophFGD

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Basic Information
Locus ID: Sbi_jg35520
Species & Taxonomic ID: Salicornia bigelovii & 46105
Genome Assembly:
Description: Ribonuclease H protein
Maps and Mapping Data
Chromosome/Scaffold Start End Strand ID
ptg000009l 29593800 29599370 + Sbi_jg35520
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.51 17,988.15 Da 61.16 65.18 -0.72
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 97 112 - -
MobiDBLite mobidb-lite consensus disorder prediction 35 71 - -
MobiDBLite mobidb-lite consensus disorder prediction 133 159 - -
MobiDBLite mobidb-lite consensus disorder prediction 15 166 - -
MobiDBLite mobidb-lite consensus disorder prediction 72 86 - -
MobiDBLite mobidb-lite consensus disorder prediction 15 33 - -
KEGG Pathway
KO Term:
K07408 (cytochrome P450 family 1 subfamily A1 [EC:1.14.14.1])
Pathway:
ko00140 (Steroid hormone biosynthesis) map00140 (Steroid hormone biosynthesis) ko00380 (Tryptophan metabolism) map00380 (Tryptophan metabolism) ko00830 (Retinol metabolism) map00830 (Retinol metabolism) ko00980 (Metabolism of xenobiotics by cytochrome P450) map00980 (Metabolism of xenobiotics by cytochrome P450) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)
Reaction:
R02354 (Estrone + H+ + Oxygen + NADH <=> 2-Hydroxyestrone + NAD+ + H2O) R02355 (Estrone + H+ + Oxygen + NADPH <=> 2-Hydroxyestrone + NADP+ + H2O) R03089 (Estradiol-17beta + H+ + Oxygen + NADPH <=> Estriol + NADP+ + H2O) R03408 (Dehydroepiandrosterone + H+ + Oxygen + NADPH <=> 16alpha-Hydroxydehydroepiandrosterone + NADP+ + H2O) R03629 (Melatonin + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 6-Hydroxymelatonin + [Oxidized NADPH---hemoprotein reductase] + H2O) R07000 (Naphthalene + NADPH + Oxygen + H+ <=> (1R,2S)-Naphthalene 1,2-oxide + NADP+ + H2O) R07001 (Naphthalene + NADPH + Oxygen + H+ <=> (1S,2R)-Naphthalene 1,2-oxide + NADP+ + H2O) R07021 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-7,8-oxide + NADP+ + H2O) R07022 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-5,6-oxide + NADP+ + H2O) R07079 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-9,10-oxide + NADP+ + H2O) R07080 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-oxide + NADP+ + H2O) R07081 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-4,5-oxide + NADP+ + H2O) R07085 (Benzo[a]pyrene-7,8-dihydrodiol + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-dihydrodiol-9,10-oxide + NADP+ + H2O) R07087 (9-Hydroxybenzo[a]pyrene + NADPH + Oxygen + H+ <=> 9-Hydroxybenzo[a]pyrene-4,5-oxide + NADP+ + H2O) R07098 (Trichloroethene + NADPH + Oxygen + H+ <=> TCE epoxide + NADP+ + H2O) R07099 (Trichloroethene + NADPH + Oxygen + H+ <=> Chloral + NADP+ + H2O) R08390 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-18-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O) R08392 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-4-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O) R09418 (trans-3,4-Dihydro-3,4-dihydroxy-7,12-dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> (1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-Tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol + H2O + NADP+) R09423 (4-(N-Nitrosomethylamino)-1-(3-pyridyl)-1-butanone + Oxygen + NADPH + H+ <=> 4-Hydroxy-4-(methylnitrosoamino)-1-(3-pyridinyl)-1-butanone + H2O + NADP+) R09442 (7,12-Dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> 7,12-Dimethylbenz[a]anthracene 5,6-oxide + H2O + NADP+)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_048493852.1 uncharacterized protein LOC125494320 [Beta vulgaris subsp. vulgaris] 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia bigelovii 53 Sbi_jg10635, Sbi_jg10720, Sbi_jg1293, Sbi_jg13061 ...
Sbi_jg18564, Sbi_jg20154, Sbi_jg22909, Sbi_jg23548, Sbi_jg2624, Sbi_jg26374, Sbi_jg26376, Sbi_jg27672, Sbi_jg28195, Sbi_jg28357, Sbi_jg28789, Sbi_jg31540, Sbi_jg32427, Sbi_jg34902, Sbi_jg35467, Sbi_jg35520, Sbi_jg35797, Sbi_jg36303, Sbi_jg37449, Sbi_jg38994, Sbi_jg38998, Sbi_jg39124, Sbi_jg40215, Sbi_jg40729, Sbi_jg40921, Sbi_jg40961, Sbi_jg41293, Sbi_jg41718, Sbi_jg45579, Sbi_jg47260, Sbi_jg47861, Sbi_jg4840, Sbi_jg49551, Sbi_jg50252, Sbi_jg51327, Sbi_jg51946, Sbi_jg53980, Sbi_jg5405, Sbi_jg54236, Sbi_jg54332, Sbi_jg55467, Sbi_jg5680, Sbi_jg57078, Sbi_jg57460, Sbi_jg59106, Sbi_jg59326, Sbi_jg7370, Sbi_jg8928, Sbi_jg9329
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