Basic Information
Locus ID:
Sbi_jg35483
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 28168808 | 28177095 | - | Sbi_jg35483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 168,196.19 Da | 38.80 | 106.15 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 626 | 825 | 1.99645E-101 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 9.53689E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 8.26138E-126 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 600 | 6.87034E-105 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 967 | 1194 | 3.8E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 316 | 580 | 1.2E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 644 | 778 | 1.4E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 1.0E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1261 | 1496 | 1.31E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 950 | 1249 | 2.09E-49 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 294 | 610 | 1.57E-40 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 848 | 1.26E-53 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 609 | 5.7E-57 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1503 | 2.5E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 612 | 866 | 2.8E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1250 | 9.3E-60 | IPR036640 |
| SMART | SM00382 | AAA_5 | 653 | 834 | 5.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1295 | 1480 | 9.7E-15 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1503 | 17.860609 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1222 | 35.082733 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 315 | 592 | 38.142086 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 626 | 849 | 22.549128 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 751 | 765 | - | IPR017871 |
| Coils | Coil | Coil | 904 | 928 | - | - |
| Coils | Coil | Coil | 473 | 493 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010684771.2 | ABC transporter C family member 5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology