Basic Information
Locus ID:
Sbi_jg35227
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 19797641 | 19799941 | + | Sbi_jg35227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 16,651.65 Da | 44.00 | 106.32 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 80 | 142 | 2.0E-10 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 44 | 143 | 1.3E-24 | IPR011009 |
| SUPERFAMILY | SSF47973 | Ribosomal protein S7 | 1 | 48 | 3.4E-14 | IPR036823 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 80 | 143 | 1.9E-17 | - |
| Gene3D | G3DSA:1.10.455.10 | Ribosomal protein S7 domain | 1 | 61 | 5.2E-17 | IPR036823 |
| SMART | SM00220 | serkin_6 | 7 | 143 | 0.0047 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 144 | 14.054156 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45780.1 | phototropin 1. Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. | 0 |
| RefSeq | XP_021716255.1 | phototropin-1-like isoform X2 [Chenopodium quinoa] | 0 |
| Q2QYY8 | Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A126WWR0 | Putative LOV domain-containing protein OS=Alternanthera ficoidea OX=326744 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg12034, Sbi_jg23301, Sbi_jg26053, Sbi_jg31441 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12929, Seu_jg25019 |
| Poaceae | Zea mays | 1 | Zm00001eb187930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8071 |