Basic Information
Locus ID:
Sbi_jg35107
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 17112834 | 17129288 | - | Sbi_jg35107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 93,433.42 Da | 45.87 | 83.82 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 683 | 823 | 9.13684E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 257 | 822 | 1.3E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 255 | 825 | 4.32E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 241 | 479 | 2.2E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 647 | 828 | 3.4E-54 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 3 | 122 | 3.1E-6 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 257 | 825 | 55.967957 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 258 | 273 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 768 | 785 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021861826.1 | ubiquitin carboxyl-terminal hydrolase 8 [Spinacia oleracea] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QF22 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_186300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology