Basic Information
Locus ID:
Sbi_jg34742
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 10512300 | 10517313 | - | Sbi_jg34742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 73,295.43 Da | 37.25 | 95.91 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 263 | 305 | 1.70112E-28 | - |
| Pfam | PF04564 | U-box domain | 259 | 329 | 2.0E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 6.9E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 1.1E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 588 | 2.0E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 628 | 1.66E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 335 | 5.89E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 508 | 637 | 5.9E-20 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 120 | 6.3E-9 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 332 | 5.0E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 344 | 492 | 2.2E-34 | IPR011989 |
| SMART | SM00185 | arm_5 | 384 | 424 | 1.9E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.55 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 2.2E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 46.521301 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.0124 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 12.4774 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 677 | - | - |
| Coils | Coil | Coil | 614 | 659 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010685786.2 | U-box domain-containing protein 13 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology