Basic Information
Locus ID:
Sbi_jg3468
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter A family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 34530190 | 34540589 | + | Sbi_jg3468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 13,704.60 Da | 58.18 | 85.21 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 93 | 3.99E-7 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 114 | 6.1E-13 | IPR027417 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41700.2 | ATP-binding cassette A1. | 0 |
| RefSeq | XP_048497584.1 | ABC transporter A family member 1 isoform X5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84M24 | ABC transporter A family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438JKZ9 | ABC transporter A family member 1 OS=Vitis vinifera OX=29760 GN=ABCA1_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 19 | Sbi_jg1240, Sbi_jg13942, Sbi_jg14483, Sbi_jg19568 ... |