Basic Information
Locus ID:
Sbi_jg34000
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 125941124 | 125942821 | + | Sbi_jg34000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 11,559.75 Da | 48.62 | 57.77 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 25 | 98 | 5.67916E-47 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 27 | 97 | 3.5E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 15 | 102 | 6.66E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 5 | 102 | 1.5E-38 | - |
| SMART | SM00213 | ubq_7 | 27 | 98 | 7.7E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 25 | 102 | 17.147337 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_021763483.1 | small ubiquitin-related modifier 1-like [Chenopodium quinoa] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KQ00 | Small ubiquitin-related modifier OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology