Basic Information
Locus ID:
Sbi_jg33943
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 125388595 | 125392367 | + | Sbi_jg33943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 101,850.34 Da | 37.29 | 89.28 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 583 | 858 | 1.32124E-93 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 186 | 206 | 1.7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 322 | 360 | 4.7E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 580 | 853 | 1.3E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 62 | 6.1E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 436 | 4.08E-48 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 564 | 866 | 3.33E-76 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 319 | 9.4E-73 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 655 | 872 | 2.6E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 541 | 654 | 9.2E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 448 | 1.7E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 135 | 160 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 386 | 410 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 88 | 110 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 92.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 577 | 859 | 1.9E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 184 | 207 | 0.072 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 90 | 112 | 7.711955 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 577 | 859 | 40.145519 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 702 | 714 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 583 | 605 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 931 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010685103.2 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology