Basic Information
Locus ID:
Sbi_jg33740
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
GATA transcription factor
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 122888163 | 122901846 | - | Sbi_jg33740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 55,971.33 Da | 40.68 | 73.60 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 222 | 272 | 1.65781E-15 | IPR000679 |
| CDD | cd02413 | 40S_S3_KH | 301 | 362 | 1.93068E-32 | - |
| Pfam | PF00320 | GATA zinc finger | 222 | 258 | 5.5E-14 | IPR000679 |
| Pfam | PF06203 | CCT motif | 146 | 188 | 1.7E-14 | IPR010402 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 373 | 455 | 4.0E-24 | IPR001351 |
| Pfam | PF07650 | KH domain | 307 | 360 | 5.6E-8 | IPR004044 |
| Pfam | PF06200 | tify domain | 83 | 112 | 8.7E-13 | IPR010399 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 360 | 458 | 3.92E-27 | IPR036419 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 218 | 265 | 1.43E-11 | - |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 299 | 366 | 9.16E-16 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 360 | 486 | 1.3E-63 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 282 | 358 | 1.5E-24 | IPR015946 |
| Gene3D | G3DSA:3.30.50.10 | - | 217 | 266 | 1.1E-13 | IPR013088 |
| SMART | SM00401 | GATA_3 | 216 | 269 | 3.0E-12 | IPR000679 |
| SMART | SM00322 | kh_6 | 309 | 373 | 0.0077 | IPR004087 |
| SMART | SM00979 | tify_2 | 78 | 113 | 2.8E-11 | IPR010399 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 301 | 458 | 5.4E-56 | IPR005703 |
| ProSiteProfiles | PS51320 | Tify domain profile. | 78 | 113 | 14.771916 | IPR010399 |
| ProSiteProfiles | PS50114 | GATA-type zinc finger domain profile. | 216 | 264 | 8.721336 | IPR000679 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 146 | 188 | 13.205225 | IPR010402 |
| ProSitePatterns | PS00344 | GATA-type zinc finger domain. | 222 | 249 | - | IPR000679 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 414 | 450 | - | IPR018280 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_021761914.1 | GATA transcription factor 24-like [Chenopodium quinoa] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RS54 | GATA transcription factor 28-like OS=Spinacia oleracea OX=3562 GN=SOVF_034650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology