halophFGD

Basic Information

Locus ID: Sbi_jg33654

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: synthase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000017l	121720335	121729017	+	Sbi_jg33654

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.35	55,075.47 Da	43.05	74.33	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00701	Dihydrodipicolinate synthetase family	61	104	2.6E-5	IPR002220
SUPERFAMILY	SSF54001	Cysteine proteinases	308	411	3.53E-10	IPR038765
Gene3D	G3DSA:3.20.20.70	Aldolase class I	362	487	4.6E-9	IPR013785
Gene3D	G3DSA:3.20.20.70	Aldolase class I	54	113	1.7E-5	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity) GO:0016829 (lyase activity)

KEGG Pathway

KO Term:

K01714 (4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7])

Pathway:

ko00261 (Monobactam biosynthesis) map00261 (Monobactam biosynthesis) ko00300 (Lysine biosynthesis) map00300 (Lysine biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00016 (Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine) M00525 (Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine) M00526 (Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine) M00527 (Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine)

Reaction:

R10147 (L-Aspartate 4-semialdehyde + Pyruvate <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45440.1	dihydrodipicolinate synthase. Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.
RefSeq	XP_030489842.1	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Cannabis sativa]
Swiss-Prot	Q9FVC8	4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHDPS2 PE=1 SV=2
TrEMBL	A0A7J6HER9	4-hydroxy-tetrahydrodipicolinate synthase OS=Cannabis sativa OX=3483 GN=F8388_006523 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	103	Sbi_jg1018, Sbi_jg1323, Sbi_jg14120, Sbi_jg14340, Sbi_jg3658 ... Sbi_jg14358, Sbi_jg14422, Sbi_jg14715, Sbi_jg15292, Sbi_jg15973, Sbi_jg15974, Sbi_jg17125, Sbi_jg17341, Sbi_jg17696, Sbi_jg18172, Sbi_jg18605, Sbi_jg20068, Sbi_jg20069, Sbi_jg20829, Sbi_jg20971, Sbi_jg22016, Sbi_jg23032, Sbi_jg24312, Sbi_jg24876, Sbi_jg25632, Sbi_jg27612, Sbi_jg27649, Sbi_jg27783, Sbi_jg27794, Sbi_jg27883, Sbi_jg28336, Sbi_jg28677, Sbi_jg29003, Sbi_jg29068, Sbi_jg31876, Sbi_jg32627, Sbi_jg32907, Sbi_jg32955, Sbi_jg33022, Sbi_jg33654, Sbi_jg36012, Sbi_jg36358, Sbi_jg36540, Sbi_jg37674, Sbi_jg37820, Sbi_jg39126, Sbi_jg39446, Sbi_jg40047, Sbi_jg40762, Sbi_jg41019, Sbi_jg42089, Sbi_jg42386, Sbi_jg42663, Sbi_jg45013, Sbi_jg45051, Sbi_jg45312, Sbi_jg4601, Sbi_jg46653, Sbi_jg47617, Sbi_jg47924, Sbi_jg48681, Sbi_jg4943, Sbi_jg49763, Sbi_jg50178, Sbi_jg50626, Sbi_jg50907, Sbi_jg51018, Sbi_jg51142, Sbi_jg51229, Sbi_jg51657, Sbi_jg52584, Sbi_jg53113, Sbi_jg54099, Sbi_jg54386, Sbi_jg54653, Sbi_jg54860, Sbi_jg54934, Sbi_jg55487, Sbi_jg56230, Sbi_jg56276, Sbi_jg57499, Sbi_jg57500, Sbi_jg57520, Sbi_jg57835, Sbi_jg59091, Sbi_jg59527, Sbi_jg59534, Sbi_jg59737, Sbi_jg59852, Sbi_jg60221, Sbi_jg60228, Sbi_jg60506, Sbi_jg60691, Sbi_jg60803, Sbi_jg61116, Sbi_jg61247, Sbi_jg61438, Sbi_jg61555, Sbi_jg62837, Sbi_jg63187, Sbi_jg681, Sbi_jg7403, Sbi_jg8948