Basic Information
Locus ID:
Sbi_jg33482
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
pre-mRNA-processing factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 118467374 | 118471558 | - | Sbi_jg33482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 42,460.99 Da | 33.22 | 90.75 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 2 | 72 | 3.26041E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 248 | 312 | 7.56704E-5 | - |
| Pfam | PF06424 | PRP1 splicing factor, N-terminal | 336 | 365 | 7.7E-10 | IPR010491 |
| Pfam | PF06424 | PRP1 splicing factor, N-terminal | 97 | 137 | 2.1E-12 | IPR010491 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 84 | 2.48E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 241 | 320 | 2.35E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 93 | 8.5E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 207 | 321 | 1.2E-7 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 260 | 318 | 8.763808 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 78 | 9.177541 | IPR000626 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03430.1 | pre-mRNA splicing factor-related. Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | 0 |
| RefSeq | XP_010685372.2 | protein STABILIZED1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZT71 | Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QW54 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_134540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg33482 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G306900 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04200 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8741_chr05_- |